PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000560.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 647aa    MW: 74017.2 Da    PI: 7.6694
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000560.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.22.3e-0746993890
                     FAR1 38 egkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                             e k+++  ++   ++ +r+r+++r+gC ak++ +++  +++ev ++e+ H+H+l+
  Itr_sc000560.1_g00012.1 46 EAKDTDLMESgaPTHPKRRRTSNRVGCIAKINFRLN-GEVYEVVSFEERHTHDLC 99
                             44443333335567789999****************.*****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-54399IPR004330FAR1 DNA binding domain
PfamPF105519.5E-28221311IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MGPSDHTVEM QTTDMEESAD VPKYWMTTCD PSLKPVVGQR FERYKEAKDT DLMESGAPTH  60
PKRRRTSNRV GCIAKINFRL NGEVYEVVSF EERHTHDLCE DNYKPFMKVN RKLDIGHQHF  120
IANCAKANIG PSKTFNLYAE MVGGTNKVGT TQQDFINYKR EILAYMKGGD AQMVLSNYLE  180
KKSDCDDFYF EYEVNEKDQL SRVFWADGVA RKQFSVFGEA MAFDVTYQTN KYKLVFVPFT  240
GVDHHKRCVT FATGLIARED EDSYRWLLIN FKKAMGRTPP ITITDQDPAM KVAIAMEFPE  300
TGHRFCMWHI LTKVGDKVGG EMAKNTEFRR ALNSVVWNEN CMPEEFENGW NGVVHKYGLQ  360
DNGWLKLMYE QRESWIPAYF QDMFMGGLLR TTSRSESENS VFRSNTSKHM CLVKFFYQFE  420
RTINRQRSKQ AELDAACNGH LPALKTPLSV EREAASIYTL AIFYQLQGEI IDDKGKSYTV  480
IVENGSNNIS FTCRMYRRIG LLCSHAFVIL KDERFDHIPP QHITPRWTRD VVQKTSRDPY  540
SCTQAEELQS AAKSMEETQV INTFYKCLGL ANGRVEKLQQ IAHALEGVET SISGDKDSGE  600
ANLGKRATME TYCGILAPET IVVHPPQVSK NKGSGKRIKS MKEIAIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16066PKRRRTS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-80FAR1-related sequence 5